Data frame of accepted data names for standard genomic files. This serves as a dictionary to help disambiguate raw column names from user entered mutation, CNA or structural variant data
Format
A data frame
- maf_column_name
data field names as they appear in common MAF file
- api_column_name
data field names as they appear in common cBioPortal API retrieved files
- mutation_input
does this field appear in mutation files?
- fusion_input
does this field appear in mutation/sv files?
- cna_input
does this field appear in CNA files?
- definition
variable definition
- notes
data notes
- sc_maf_column_name
snake case version of
maf_column_name- sc_api_column_name
snake case version of
api_column_name- internal_column_name
name used for each field for all internal processing functions