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This set contains a random sample of 200 patients from publicly available prostate cancer data from cBioPortal. The file is in API format.

Usage

mutations

Format

A data frame with mutations from Abida et al. JCO Precis Oncol 2017. Retrieved from cBioPortal.There are 725 observations and 29 variables.

hugoGeneSymbol

Character w/ 324 levels, Column containing all HUGO symbols genes

entrezGeneId

Entrez Gene ID

sampleId

MSKCC Sample ID

patientId

Patient ID

studyId

Indicator for Abida et al. 2017 study

center

Cancer Center ID

mutationStatus

Somatic or germ-line mutation status

variantType

Mutation variant type

chr

Chromosome mutation observed on

endPosition

End Position

fisValue

fisValue

functionalImpactScore

functionalImpactScore

keyword

keyword

linkMsa

linkMsa

linkPdb

linkPdb

linkXvar

linkXvar

molecularProfileId

molecularProfileId

mutationType

mutationType

ncbiBuild

ncbiBuild

proteinChange

proteinChange

proteinPosEnd

proteinPosEnd

proteinPosStart

proteinPosStart

referenceAllele

referenceAllele

refseqMrnaId

refseqMrnaId

startPosition

startPosition

uniquePatientKey

uniquePatientKey

uniqueSampleKey

uniqueSampleKey

validationStatus

validationStatus

variantAllele

variantAllele