Consequence Map — consequence

Data frame used as a data dictionary to recode common variant classification types to standardized types that can be used in oncoKB annotation.

Usage

consequence_map

A data frame

variant_classification: character indicating type of mutation/variant classification as it appears in common mutation files
consequence_final_coding: final value to recode variant_classification column to
consequence_final_coding_2: final value to recode variant_classification column to
consequence_final_coding_3: final value to recode variant_classification column to